FastQCFastQC Report
Sun 21 May 2023
EGAF00007924655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570914
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26380.46206609051450837No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23990.42020339315553656No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15580.27289574261622596No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12730.22297578969862358No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10970.192148029300385No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10020.17550804499451755No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9640.16885205127217057No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9550.16727563170635157No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9370.16412279257471352No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8890.1557152215570121No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8700.1523872246958386No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8390.14695733508023975No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7800.13662302903764842No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7760.1359223981195066No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7230.12663903845412794No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6990.12243525294527721No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6510.11402768192757579No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6240.10929842323011872No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6000.10509463772126801No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)