FastQCFastQC Report
Sun 21 May 2023
EGAF00007924656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570914
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53650.9397212189576714No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21040.3685318629425798No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15470.270969007591336No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12700.2224503165100173No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11300.19792823437505472No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA11080.1940747643252749No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10730.18794424379153427No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10500.183915616012219No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10430.1826895119054709No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10360.18146340779872275No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10210.17883604185569105No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9880.17305583678102132No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9720.17025331310845415No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9070.15886806068865011No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8900.15589037928654753No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8620.15098596285955504No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8300.14538091551442073No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8070.14135228773510547No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7890.13819944860346742No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6640.11630473241153658No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6440.11280157782082764No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5780.10124116767148818No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5760.10089085221241728No Hit

[OK]Adapter Content

Adapter graph