FastQCFastQC Report
Sun 21 May 2023
EGAF00007924657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555036
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24670.4444756736499975No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22580.4068204584927825No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15180.27349577324714075No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12400.22340893203323747No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10290.18539337988887206No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9320.1679170360120785No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9170.16521450860845063No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8590.1547647359810895No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8530.15368372501963837No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8480.1527828825517624No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8190.14755799623808186No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7930.14287361540512689No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7770.1399909195079238No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7320.1318833372970402No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7230.13026182085486346No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6610.1190913742532016No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6320.11386648793952105No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6250.1126053084844947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)