FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552591
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG15140.27398202287044127No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15030.27199140051140897No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12930.23398861002079294No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12780.23127412498574895No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11220.20304348062129135No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10740.19435712850915055No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8680.15707820069454623No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8490.1536398529834905No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8180.14802991724439957No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG8160.1476679859063937No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7570.13699101143522063No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7390.13373362939316782No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7000.1266759683020534No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAGAAG6780.12269472358398888No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6720.12160892956997128No Hit
CGGGAAAGACAGATCTTCGTCAGAAGAAGAGCTGGATGCCGCAG6400.1158180281618774No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6140.11111292076780115No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5590.1011598089726398No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)