FastQCFastQC Report
Wed 31 May 2023
EGAF00007924660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552591
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19160.3467302218096205No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC15460.2797729242785351No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15290.2766965079054853No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13090.2368840607248399No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12430.2249403265706463No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11410.20648182833234704No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10850.1963477508681828No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9240.1672122781587105No Hit
ATGTCCAACATGGACATCGATGGTATTAACA8370.1514682649554553No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8190.14821088291340248No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8160.1476679859063937No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8020.14513446654035264No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG7950.1438677068573321No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7850.14205805016730277No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7800.1411532218222881No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC7130.12902852199909157No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC6920.12522824295002993No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6890.12468534594302115No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6680.12088506689395953No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6670.12070410122495662No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6420.11617995949988327No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6260.11328450879583635No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5720.10351236266967793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)