FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551524
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15590.2826712890100884No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG14610.26490234332504115No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12990.23552918821302427No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12920.23425997780694946No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10690.19382656058485215No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10480.19001892936662776No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9500.1722499836815805No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8290.15031077523371603No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG8200.14867893328304843No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8000.14505261783712042No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7700.13961314466822838No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7360.1334484084101508No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6820.12365735670614515No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6670.12093762012169915No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAGAAG6590.11948709394332795No Hit
CGGGAAAGACAGATCTTCGTCAGAAGAAGAGCTGGATGCCGCAG6520.11821788353725314No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5760.10443788484272669No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5570.10099288516909509No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)