FastQCFastQC Report
Sun 21 May 2023
EGAF00007924664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551524
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18530.33597812606523014No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15840.2872041833174984No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC14900.2701605007216368No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13000.23571050398532067No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12620.22882050463805745No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11420.2070626119624894No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10060.18240366693017893No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9540.1729752467707661No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8530.15466235376882964No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8320.15085472255060522No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8270.14994814368912324No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8240.149404196372234No Hit
ATGTCCAACATGGACATCGATGGTATTAACA8050.1459591966986024No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG7740.140338407757414No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7520.1363494607668932No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC7180.13018472450881557No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC6810.12347604093384874No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6800.12329472516155236No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6700.12148156743858834No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6490.11767393622036394No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6330.11477288386362154No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6070.11005867378391511No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5840.1058884110210979No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5770.1046192006150231No Hit

[OK]Adapter Content

Adapter graph