FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536716
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15350.28599855417017567No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG13540.25227494615401813No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12810.23867371198175572No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12150.22637670574381982No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10830.20178269326794804No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10490.19544787187264773No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9280.17290336043643192No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7780.14495561898657763No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7350.13694393310428607No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7010.13060911170898576No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7000.1304227934326534No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6880.12818697411666505No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6720.12520588169534727No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6290.11719419581305571No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5990.11160464752308483No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAGAAG5980.11141832924675248No Hit
CGGGAAAGACAGATCTTCGTCAGAAGAAGAGCTGGATGCCGCAG5890.10974146475976121No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5730.10676037233844343No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5450.10154346060113728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)