FastQCFastQC Report
Sun 21 May 2023
EGAF00007924668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences592628
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12180.2055252198681129No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11970.20198168159452473No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11000.18561390956890325No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9580.16165284124273577No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7880.1329670552184507No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6890.1162618033572494No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6630.1118745654947117No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6330.10681236796101434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)