FastQCFastQC Report
Wed 31 May 2023
EGAF00007924669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572282
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT32270.5638828409770008No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27520.48088180302717887No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC27190.4751154151275071No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26750.4674268979279446No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC24190.4226937069486722No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20440.3571665717251285No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG17650.3084143831188121No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15840.2767866191842483No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15520.2711949703118393No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15440.269797058093737No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT15400.26909810198468587No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15200.2656033214394302No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC14940.2610601067305979No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13170.23013129890508527No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11200.19570771053431701No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11010.19238766901632412No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10900.1904655397164335No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA10450.18260228348960827No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10410.18190332738055714No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9860.17229268088110408No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT9840.1719432028265785No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9390.16407994659975328No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9380.1639052075724905No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9170.16023568799997204No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8940.156216690372928No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC8810.15394508301851184No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8540.14922712928241672No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8410.14695552192800054No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7660.1338500948832918No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7510.13122900947435007No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7270.12703527282004326No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7090.12388997032931318No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6850.11969623367500638No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6810.11899727756595525No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6770.11829832145690412No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6730.11759936534785297No Hit
GTCAATGCACGCGCCAGAGTTGAAGGTCTGAGTAGCAGAGCTGC6700.11707514826606463No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6290.10991084814829052No Hit
GTCGATGCAAGCACCGGAGTTGAAGGTCTGGGTGGCGCTAGAAC6290.10991084814829052No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6180.10798871884839992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)