FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391432
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT31670.8090805044043409No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT16870.4309816264383086No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16580.4235729322078931No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13330.34054446238427105No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10880.2779537697480022No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10700.27335526988084774No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA8380.21408571603752377No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7480.19109321670175153No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6770.17295468944797562No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6590.1683561895808212No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6120.15634899548325124No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5920.15123955118641297No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5330.13616669051074007No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5270.13463385722168858No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5260.13437838500684668No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5230.13361196836232092No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5130.13105724621390177No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4920.1256923297022216No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4770.12186024647959288No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4590.11726174661243842No Hit
TTTTACGTCTTCCGGAATTGCTTTGCGACGGCGTTTTTTACCTT4570.1167508021827546No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4410.112663246745284No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4150.10602096915939421No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4070.10397719144065892No Hit
CAGCAGAGTACCACCTTTAGCGTCCATAATGATATCACCCTGGG4040.10321077479613318No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG3960.10116699707739786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)