FastQCFastQC Report
Sun 21 May 2023
EGAF00007924673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423172
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21460.507122399402607No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14100.3331978486289263No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT10690.2526159575775335No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9750.23040276766893839No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9400.22213189908595085No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8770.20724433563657332No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7940.18763056156834573No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6980.16494475059786565No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6920.16352688741221064No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6180.14603990812246556No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6070.14344049228209807No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5870.13871428166324803No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5740.13564224476099554No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5590.132097586796858No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5480.1294981709564905No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5450.128789239363663No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5200.12288147609010047No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5170.12217254449727298No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4930.11650109175465297No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4890.11555584963088295No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4790.11319274432145794No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4790.11319274432145794No Hit
GGTTGCACCACGAACCTGCGGATCGCCGTGATCGATGTAGTTCA4620.10917546529543544No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4530.10704867051695291No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4420.10444925467658542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)