FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433322
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21330.49224364329528614No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14290.32977785572853446No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT11490.2651607811281218No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT10170.23469844595935585No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8940.20631308818846028No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA8210.18946649373906702No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8110.18715874107476657No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6630.1530040016431199No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6540.1509270242452495No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6360.1467730694495087No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6220.14354221571948803No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5910.13638818246015663No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5690.13131112659869568No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5620.12969569973368533No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5490.12669562127009476No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5280.12184934067506381No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5240.12092623960934362No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5190.1197723632771934No Hit
GGTTGCACCACGAACCTGCGGATCGCCGTGATCGATGTAGTTCA5030.11607995901431267No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5010.11561840848145258No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4900.1130798805507221No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4820.11123367841928172No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4790.11054135261999161No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4760.10984902682070147No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4730.10915670102141133No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4640.10707972362354093No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4500.10384886989352028No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4450.10269499356137007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)