FastQCFastQC Report
Sun 21 May 2023
EGAF00007924676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433322
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21560.4975514744231772No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20810.48024332944092385No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14830.3422397201157569No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14720.33970119218502637No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC11560.2667762079931321No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10240.2363138728243662No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG8550.19731285279768856No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7340.1693890455596531No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6840.15785028223815084No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6770.15623485537314052No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6720.1550809790409903No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6120.1412344630551876No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5930.13684973299301673No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5840.13477275559514634No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5610.1294649244672553No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5550.12808027286867502No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5500.12692639653652482No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5470.12623407073723467No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5430.12531096967151448No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5270.12161856540863376No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5210.1202339138100535No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5200.12000313854362345No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5170.1193108127443333No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5110.11792616114575305No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5010.11561840848145258No Hit
GCGCTGTCTTGCGTGGGTGCAGCTGTTGCCC5000.11538763321502253No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4980.11492608268216246No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4910.11331065581715215No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4880.112618330017862No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4870.11238755475143196No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4820.11123367841928172No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4770.11007980208713151No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4500.10384886989352028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)