FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410394
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20730.5051243439231567No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13570.3306578556216709No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT10130.24683596738743746No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9700.23635823135815826No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8760.21345341306159446No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8340.20321934531206598No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7500.18275120981300896No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6230.15180533828467277No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6130.149368655487166No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6100.14863765064791395No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT5760.14035292913639089No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5740.13986559257688952No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5650.13767257805913344No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5590.13621056838062934No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5310.12938785654761034No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5240.1276821785893556No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5110.12451449095259677No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5080.12378348611334475No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5050.12305248127409271No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4910.11964112535758321No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4710.11476775976256963No Hit
GGTTGCACCACGAACCTGCGGATCGCCGTGATCGATGTAGTTCA4660.11354941836381623No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4490.10940705760805469No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4350.1059957016915452No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4330.10550836513204384No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4230.10307168233453705No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT4170.10160967265603299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)