FastQCFastQC Report
Sun 21 May 2023
EGAF00007924678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410394
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61721.5039206226211883No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20320.495133944453379No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20020.4878238960608586No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13620.33187619702042426No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC9940.24220627007217455No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9760.23782024103666233No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7550.18396955121176237No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7000.17056779582547504No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6720.16374508399245605No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6060.14766297752891122No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5900.14376428505290037No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5730.13962192429713885No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5730.13962192429713885No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5590.13621056838062934No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5440.13255554418436916No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5420.13206820762486782No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5220.12719484202985423No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5200.12670750547035287No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5190.1264638371906022No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5110.12451449095259677No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4950.12061579847658592No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4860.11842278395882981No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4800.11696077428032572No Hit
GCGCTGTCTTGCGTGGGTGCAGCTGTTGCCC4620.11257474524481352No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4610.11233107696506284No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4580.11160007212581081No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4510.10989439416755604No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4460.10867605276880267No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4430.10794504792955063No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4380.10672670653079723No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4320.10526469685229316No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4290.10453369201304114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)