FastQCFastQC Report
Sun 21 May 2023
EGAF00007924681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446599
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32530.7283939283339192No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA29060.6506955904513892No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25060.561129783094006No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22890.5125403326026257No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19050.4265571575395377No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16360.3663241520916975No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15600.34930664869379463No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14900.3336326324062526No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14060.3148238128612021No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12650.28325186576772454No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12470.2792214044366423No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10640.23824504757063944No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9870.22100362965434317No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8950.20040349396214502No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8720.19525346003909547No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8610.19279040033676745No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8410.18831210996889827No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8380.1876403664137179No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8310.1860729647849637No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8210.1838338196010291No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8010.17935552923315995No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7960.17823595664119266No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7780.17420549531011043No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7170.16054670968810947No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6980.15629233383863375No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6800.15226187250755152No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6720.15047055636040385No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6540.14644009502932162No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6350.1421857191798459No Hit
CGGCGGGATTGCAATGAAGGACGGACGCGGACGAGGGCGGCGTT6110.1368117707384029No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5940.13300522392571412No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5750.12875084807623843No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5660.12673561741069728No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5640.1262877883739104No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4940.1106137720863683No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4720.10568765268171222No Hit
TTCCGGCGCGGAGGTCGGAGAATCGGAGCTGGTGTCTTCGGTCA4720.10568765268171222No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4710.10546373816331878No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4630.1036724220161711No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4530.10143327683223653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)