FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007924682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446599
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT74501.668163162031263No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31360.7021959296818847No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26190.5864321236724668No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21650.4847749323218368No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20190.4520834126363919No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18000.40304613310822457No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17470.39117866363337134No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17330.3880438603758629No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16880.3779677070481573No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16680.3734894166802881No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15580.34885881965700777No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15110.33833483729251523No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13310.29803022398169277No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11690.26175607200195256No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10480.2346624152763441No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9730.21786882639683475No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9660.21630142476808056No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9160.20510569884840762No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8760.19614911811266933No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8590.1923425712999805No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8550.1914469132264067No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7500.16793588879509358No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7220.16166628228007676No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7150.16009888065132255No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7100.15897930805935526No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6900.15450101769148608No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6350.1421857191798459No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6320.14151397562466553No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5970.1336769674808945No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5870.1314378222969599No Hit
GTCCCGATCAACAACCAGTTCATTCCGTATC5820.13031824970499262No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5740.12852693355784495No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5250.11755512215656551No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5210.11665946408299169No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5140.11509206245423748No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5050.11307683178869633No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5020.11240508823351597No Hit
GACGGTCCGTACGCACCGTTCCCGCCTCGCC4900.1097181140127945No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4550.10188110586902344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)