FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414031
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29910.7224096746378894No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27930.6745871685936561No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22950.5543063200581599No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21690.5238738162118295No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18110.4374068608389227No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14640.3535967113573621No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13950.3369312925843717No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13270.32050740161968544No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13180.31833365134494757No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11820.28548586941557513No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11440.2763078127000152No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9740.23524808528829966No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9230.22293016706478502No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8320.20095113650910199No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8060.19467141349319256No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8050.1944298856848883No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7800.1883916904772831No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7690.1857348845859368No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7690.1857348845859368No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7670.18525182896932837No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7630.18428571773611155No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7590.18331960650289472No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7260.1753491888288558No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6370.1538532138897812No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6340.15312863046486858No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6320.15264557484826016No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6090.14709043525726334No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5850.14129376785796233No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5840.1410522400496581No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5750.13887848977492023No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5700.13767085073339919No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5470.13211571114240236No Hit
CGGCGGGATTGCAATGAAGGACGGACGCGGACGAGGGCGGCGTT5390.1301834886759687No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5020.12124695976871297No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4730.11424265332789091No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4590.11086126401163199No Hit
TTCCGGCGCGGAGGTCGGAGAATCGGAGCTGGTGTCTTCGGTCA4450.10747987469537305No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4430.10699681907876463No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4400.10627223565385202No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4190.10120015167946361No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)