FastQCFastQC Report
Wed 31 May 2023
EGAF00007924684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414031
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68621.657363820583483No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66881.6153379819385507No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28960.6994645328489896No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22930.5538232644415515No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18930.45721214111986785No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16120.3893428269863851No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15820.3820969927372588No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15270.3688129632805273No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14810.3577026840985337No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14620.3531136557407537No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14320.3458678214916274No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14200.34296948779197695No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11970.2891087865401383No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10310.2490151703616396No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9610.23210822378034496No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9390.22679461199765233No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8620.20819697075822827No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8020.1937053022599757No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7950.19201460760184624No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7870.19008238513541256No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7550.18235349526967787No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6780.16375585403025375No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6730.16254821498873273No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6430.15530238073960645No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6320.15264557484826016No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6200.14974724114860963No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6170.14902265772369702No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5690.13742932292509497No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5280.1275266827846224No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5230.12631904374310138No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5050.1219715431936256No Hit
GTCCCGATCAACAACCAGTTCATTCCGTATC4920.11883168168567088No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4780.11545029236941194No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4770.11520876456110773No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4750.11472570894449934No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4540.10965362497011094No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4520.10917056935350251No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4430.10699681907876463No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4370.10554765222893939No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4240.10240779072098465No Hit
GACGGTCCGTACGCACCGTTCCCGCCTCGCC4190.10120015167946361No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)