FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455922
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA31730.6959523778190129No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA30620.671606108062344No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25300.5549194818411921No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24540.538249963809599No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19940.4373555125657459No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16060.35225323629919153No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15880.34830519255486686No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15240.3342677036861569No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14300.31365014191023904No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13410.2941292589521892No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13350.2928132443707476No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10580.2320572378608622No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9860.2162650628835634No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9760.21407170524782745No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9010.19762152297980792No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8850.19411215076263047No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8600.1886287566732906No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8470.1857773917468339No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8330.18270669105680357No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8270.181390676475362No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8170.17919731883962606No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8050.17656528967674295No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8000.175468610858875No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7370.16165045775373857No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6990.153315698737942No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6900.15134167686577968No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6660.14607761854001342No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6430.14103289597782076No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6290.13796219528779047No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6280.13774285952421686No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6240.13686551646992248No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6120.13423348730703938No Hit
CGGCGGGATTGCAATGAAGGACGGACGCGGACGAGGGCGGCGTT6090.13357548001631858No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5790.12699540710911075No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5190.11383526129469515No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4840.10615850956961936No Hit
TTCCGGCGCGGAGGTCGGAGAATCGGAGCTGGTGTCTTCGGTCA4790.10506183075175139No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4750.10418448769745701No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4710.10330714464316265No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4660.10221046582529468No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4620.10133312277100032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)