FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396659
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65951.6626371770210684No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT64551.62734237720561No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25890.6527016908730169No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG22910.5775741884086835No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16950.4273191834800168No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15480.3902596436737853No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12380.31210687265384124No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11800.29748474130172264No Hit
GTCCACATCAAACTGCCGAAGCTGGCTGCAA11650.2937031556072092No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11340.2858878785052148No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10000.25210571296756157No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9780.2465593872822752No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9070.22865988166157833No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8990.22664303595783783No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8890.22412197882816223No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8700.2193319702817786No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8350.21050827032791392No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG7950.20042404180921145No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7540.19008770757754143No Hit
AGCGTGCACATCAAGATCCCGAAAGTTTCCC7180.1810119019107092No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7160.18050769048477405No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA7020.1769782105032282No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6370.16059133916033672No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6220.1568097534658233No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5850.1474818420860235No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5640.14218762211370473No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5590.14092709354886693No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5570.14042288212293177No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5530.13941445927106152No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5420.13664129642841835No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5380.13563287357654813No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5370.13538076786358055No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5370.13538076786358055No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5110.12882601932642396No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5050.12731338504861858No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4730.11924600223365663No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4620.11647283939101344No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4440.11193493655759733No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4290.1081533508630839No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4280.10790124515011636No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4180.10538018802044072No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4170.10512808230747318No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4140.10437176516857047No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4010.10109439089999218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)