FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435612
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32540.7469950322764295No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27890.6402486616530306No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT25350.5819398914630451No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21420.4917219911297209No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17890.4106865742908827No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA14140.3246007915300772No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13730.31518874594822915No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13710.3147296217735049No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12630.2899369163383929No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12270.28167268119335553No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT10540.24195844007970393No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10360.2378263225071853No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9850.22611865605171574No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9080.20844237532483034No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8690.1994894539177066No Hit
AAATTCGGTCAGGCCCATACGACGTTTGTTAGAGATGTCGTAGA8570.19673470886936079No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8500.19512777425782576No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC8070.1852566045012534No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7950.18250185945290762No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7650.17561499683204318No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC7610.1746967484825946No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7580.17400806222050816No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6800.15610221940626062No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6750.15495440896944987No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6690.15357703644527698No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT6630.1521996639211041No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6180.14186936998980743No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6180.14186936998980743No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6150.141180683727721No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5950.13658944198047804No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5920.1359007557183916No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5870.13475294528158085No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5800.1331460106700458No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5750.13199820023323508No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5700.13085038979642435No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5310.12189746838930056No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5260.12074965795248983No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5060.11615841620524686No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5050.11592885411788473No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4630.10628724644867452No Hit
GCCACGGCTCAGCTGAGAGCGGATTTTACGGTACTGGCCAGAAC4600.10559856018658806No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA4570.10490987392450161No Hit
CTCACCTACAGAAACTTTAGTGTTGTTGCCTTTGTCACCGAACT4500.1033029393129666No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG4460.102384690963518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)