FastQCFastQC Report
Sun 21 May 2023
EGAF00007924697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411380
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22440.5454810637366911No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19200.4667217657640138No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16980.41275706159754966No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14170.34445038650396226No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9930.24138266323107588No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9400.22849919782196507No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG8780.21342797413583547No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8630.20978171034080415No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8480.20613544654577276No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7970.19373814964266614No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7880.19155039136564733No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG7770.18887646458262433No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7770.18887646458262433No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7330.17818075745053236No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7060.1716174826194759No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT6810.16554037629442364No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6610.16067869123438183No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6590.16019252272837767No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5860.14244737225922505No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5630.13685643444017698No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5290.12859156983810588No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5270.12810540133210171No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5180.1259176430550829No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5090.12372988477806408No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4970.12081287374203899No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4950.12032670523603481No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4920.11959745247702855No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4880.11862511546502019No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4820.11716660994700763No Hit
ATCAGCACCACGACCGTTCAGGCTCGGCAGTTTCGCGTTAACGA4790.11643735718800136No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4490.10914482959793864No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG4320.1050123972969031No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4170.10136613350187175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)