FastQCFastQC Report
Sun 21 May 2023
EGAF00007924704

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924704
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426450
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA42420.9947238832219487No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19370.45421503107046546No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16540.3878532067065307No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15860.3719076093328643No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14300.3353265330050416No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11410.26755774416695977No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11160.2616953921913472No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10190.2389494665259702No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10050.23566654941962717No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9640.22605229217962244No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8930.20940321256888267No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8730.20471333098839253No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8360.19603705006448588No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7960.1866572869035057No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7160.16789776058154532No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5380.1261578145151835No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5120.12006096846054637No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4990.11701254543322781No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4560.1069293000351741No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4520.1059913237190761No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4450.10434986516590457No Hit

[OK]Adapter Content

Adapter graph