FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401698
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55781.3886053702034862No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38410.9561909693351722No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18220.45357457592519757No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15850.39457502900188696No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15680.3903429939905103No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11160.2778206513350826No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11060.2753312189754492No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8930.22230630971525872No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8920.2220573664792954No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8270.20587605614167856No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7990.19890564553470516No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7660.19069051874791512No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7420.18471588108479503No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7170.17849230018571166No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7120.177247584005895No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5060.12596527739744784No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4700.11700332090276776No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4200.10455615910460096No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4190.10430721586863763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)