FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432570
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68451.58240284809395No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40160.9284046512703146No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22000.5085882053771644No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15860.36664586078553757No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15640.36155997873176593No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11690.27024527822086597No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11420.2640035138821462No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10720.24782116189287282No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8780.20297292923688653No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC8400.19418822387128096No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7570.17500057794114246No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7520.17384469565619437No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7510.17361351919920476No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7390.17083940171532933No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7280.1682964606884435No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6960.16089881406477566No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6290.1454099914464711No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6270.14494763853249185No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5950.137549991908824No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5870.13570058025290704No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5640.13038352174214576No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5390.12460411031740527No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5380.12437293386041565No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5360.12391058094643641No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5210.12044293409159211No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5120.11836234597868553No Hit
CCGAACACCTCTAGCCCGTCTATGCCGGAAC5080.11743764015072705No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5060.11697528723674783No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5020.11605058140878932No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4990.11535705203782047No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4790.11073352289802806No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4740.10957764061307997No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4690.10842175832813186No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4540.10495411147328755No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4520.10449175855930831No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4350.10056175879048478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)