FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475473
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45240.9514735852508974No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25370.5335739358491439No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG18650.3922409894988779No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16980.3571180697957613No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15720.3306181423550864No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12980.2729913160158411No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12530.2635270562156No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11380.239340614503873No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC9830.20674149741415393No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9310.1958050194227643No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8950.18823361158257146No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8910.18739234404477226No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8740.18381695700912565No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8430.17729713359118182No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8150.17140826082658742No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7630.1604717828351978No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7440.15647576203065158No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7060.14848372042155916No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6720.14133294635026594No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6540.13754724243016953No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6260.13165836966557512No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6030.12682108132322972No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6030.12682108132322972No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6010.1264004475543301No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5970.1255591800165309No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5850.12303537740313329No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5710.1200909410208361No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5700.11988062413638628No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5620.1181980890607879No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5510.11588460333184009No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5220.10978541368279587No Hit
CCGAACACCTCTAGCCCGTCTATGCCGGAAC5210.10957509679834607No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5130.10789256172274767No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5060.10642034353159906No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5040.10599970976269946No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4890.10284495649595246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)