FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448939
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63681.4184555140007886No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41260.919055818273752No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22880.5096460766384743No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17400.38758049534569283No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15110.33657133819962176No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12040.26818788298633No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11770.26217370288613817No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10430.2323255497962975No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC8730.19445848990620107No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8450.18822156239489105No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8140.18131639265022642No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7900.17597045478338927No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7600.16928803244984283No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7510.16728330574977893No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7370.16416484199412393No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6990.15570044037163178No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6760.15057724991591287No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6350.14144460606006606No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6220.13854888971552928No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6170.13743515265993822No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6150.13698965783770178No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6000.13364844667092857No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5920.13186646738198285No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5690.12674327692626391No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5660.1260750346929093No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5620.12518404504843642No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5390.1200608545927175No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5330.1187243701260082No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4910.1093689788590432No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4890.10892348403680678No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4860.10825524180345214No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4860.10825524180345214No Hit
CCGAACACCTCTAGCCCGTCTATGCCGGAAC4840.10780974698121572No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4510.10045908241431464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)