FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477466
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15150.31730008000569676No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13920.29153908341117485No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12000.25132679604411623No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10700.2240997264726703No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10630.22263365349574632No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10030.21006731369354048No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9620.20148031482869985No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8040.16838895334955786No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC7130.14933000464954574No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC5960.12482564203524439No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5670.11875191113084492No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5530.11581976517699688No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5330.1116309852429283No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4790.10032127942094307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)