FastQCFastQC Report
Sun 21 May 2023
EGAF00007924731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443370
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14600.32929607325709903No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11760.2652412206509236No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10920.24629541917585762No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9730.21945553375284751No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9570.21584680966235872No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9420.21246363082752556No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9190.20727608994744795No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7390.16667794392944943No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC7300.16464803662854952No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5580.1258542526557954No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC5530.12472652637751765No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5410.12201998330965108No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5320.11999007600875117No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4720.10645736066941833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)