FastQCFastQC Report
Wed 31 May 2023
EGAF00007924732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443370
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68421.5431806391952545No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27260.6148363669170219No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18780.42357399012111785No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10730.24201005931840225No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10050.22667298193382504No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9770.2203577147754697No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9070.2045695468795814No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7980.17998511401312672No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC7740.17457202787739362No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5750.12968852200193967No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA5690.1283352504680064No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5660.12765861470103976No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5540.1249520716331732No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5520.1245009811218621No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4450.10036763876671854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)