FastQCFastQC Report
Sun 21 May 2023
EGAF00007924733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487741
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16050.32906809146657756No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13050.26756003698684344No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12120.24849254009812585No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10680.21896867394785346No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10410.21343294904467738No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10180.20871733153456445No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10150.2081022509897671No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8650.17734822374990006No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC7300.14966959923401968No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC6540.13408755876582037No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6050.12404124320079715No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5760.11809546460108951No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5340.10948433697392673No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5160.10579385370514267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)