FastQCFastQC Report
Wed 31 May 2023
EGAF00007924734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487741
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30360.6224615113349093No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20760.4256357369997601No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16600.34034456812119546No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11430.23434568756778698No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11300.23168033854033188No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10700.21937872764438504No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10250.21015251947242491No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9320.19108502258370735No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC8250.16914714981926884No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA6590.1351126930071493No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6480.1328573976762257No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6430.1318322634348968No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6270.12855183386264432No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5700.11686530351149482No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5290.10845920273259783No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5240.10743406849126894No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4920.10087320934676397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)