FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428131
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18960.442855107432071No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14430.33704637132092746No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11300.2639379068556119No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11250.2627700400111181No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10800.2522592384106734No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9630.22493115424951707No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9530.22259542056052936No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8370.19550090976827184No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7790.18195365437214311No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC7020.1639685049669377No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6990.16326778486024138No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6930.16186634464684874No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6380.1490198093574163No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6300.14715122240622613No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6130.143180475134947No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5760.13453826048569245No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5400.1261296192053367No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5380.12566247246753914No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5170.12075743172066493No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5120.11958956487617108No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5040.1177209779249809No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4880.11398380402260057No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4880.11398380402260057No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC4770.11141449696471406No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4750.11094735022691651No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4290.10020297525757302No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)