FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428131
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19050.44495726775215994No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15500.36203872179309604No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14530.33938210500991517No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12330.28799596385218545No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12090.2823902029986149No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11600.2709451079225751No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11430.266974360651296No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9750.22773403467630232No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9330.21792395318255392No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9080.21208461896008463No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7770.18148650763434557No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7270.16980783918940698No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG7240.16910711908271067No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7100.16583709191812784No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6960.16256706475354507No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6870.1604649044334561No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6300.14715122240622613No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG6290.14691764903732737No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5520.12893249963212194No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5470.1277646327876281No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5380.12566247246753914No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5270.12309316540965265No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5230.12215887193405756No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5160.12052385835176617No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5070.11842169803167724No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT4980.11631953771158828No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4830.1128159371781067No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4800.1121152170714104No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4560.10650945621783986No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4510.105341589373346No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4480.10464086926664969No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4370.1020715622087632No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4360.10183798883986445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)