FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548431
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17250.3145336423360459No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16610.30286398835952016No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12950.23612815468126344No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9830.17923859154570038No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8720.1589990354301635No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8620.15717565199633135No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6940.12654281030795123No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6660.1214373366932212No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6410.11687887810864082No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6030.10995002106007866No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5590.1019271339512172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)