FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548431
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50260.9164325138440387No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA36820.6713697803369978No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18420.3358672285118821No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17800.32456225122212273No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9960.18160899000968217No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9660.17613883970818572No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8890.16209878726767815No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7010.12781917871163373No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6500.11851992319908977No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6080.11086171277699473No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5950.10849131431301294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)