FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556329
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51120.9188807342417886No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30020.5396087566889376No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13280.23870767118018293No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12780.22972018356044716No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11660.20958821129223895No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11310.2032969699584239No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11110.19970197491052957No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10380.1865802429857153No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7790.14002505711548383No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7090.1274425744478537No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6870.12348807989516994No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5730.10299660812217232No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5660.1017383598554093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)