FastQCFastQC Report
Wed 31 May 2023
EGAF00007924745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556610
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG12700.22816693914949424No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12500.22457375900540774No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11890.21361455956594383No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11860.21307558254433084No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11260.20229604211207128No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9720.17462855500260505No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8760.15738129031098974No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8540.15342879215249455No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8530.15324913314529023No Hit
CGGCACCTGCGGTTTGCGGGTACCGCTGAAGCGTGGGTGATGCT7440.13366630136001867No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6280.11282585652431686No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6210.11156824347388655No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6080.10923267638023033No Hit
CGGCCACTGACCCAGCTGCTGCTGCTGCGGACGCTGGAAAGAGC5880.1056394962361438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)