FastQCFastQC Report
Wed 31 May 2023
EGAF00007924746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556610
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA20140.36183324050951293No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA13080.23499398142325864No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12640.2270889851062683No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12620.22672966709185965No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11820.21235694651551354No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11630.20894342537863134No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10310.18522843642766032No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10250.18415048238443435No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10060.18073696124755215No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9750.17516753202421803No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9590.1722929879089488No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8850.1589982213758287No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8620.15486606421012916No Hit
ATGAGCCACCAGAGCCTGGACGATGACGCTG7200.12935448518711484No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6710.12055119383410288No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6120.10995131240904762No Hit
ATCGTTCTGCAGGAACAGCAGCACGGCCAAG5860.10528017822173516No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5570.10007006701280968No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)