FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542329
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG12590.23214690713570543No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12440.22938105836125305No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11420.21057328669497666No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11270.20780743792052422No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10990.2026445202082131No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9630.1775674913198446No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9270.17092945426115883No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9170.16908555507819056No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8720.16078800875483332No Hit
CGGCACCTGCGGTTTGCGGGTACCGCTGAAGCGTGGGTGATGCT7340.13534220002987118No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6360.1172719880367821No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6140.1132154098342519No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5870.10823688204023756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)