FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542329
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49460.9119925358961074No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19590.3612198499434845No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA12710.2343595861552674No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11950.2203459523647085No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11870.21887083301833388No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11080.20430402947288454No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11010.20301330004480672No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10590.19526892347634No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9840.18143967960407797No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9090.16761043573181594No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9020.16631970630373816No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8880.16373824744758256No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8070.14880266406553955No Hit
ATGAGCCACCAGAGCCTGGACGATGACGCTG7120.13128562182734096No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6200.11432174934403287No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6140.1132154098342519No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)