FastQCFastQC Report
Sun 21 May 2023
EGAF00007924749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563214
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12980.23046302116069556No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG12340.2190996672667938No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12010.21324043791525069No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11880.2109322566555519No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11310.2008117695937956No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10290.18270142432538966No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9790.17382380409577886No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8670.15393793478145074No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8310.147546048216131No Hit
CGGCACCTGCGGTTTGCGGGTACCGCTGAAGCGTGGGTGATGCT7700.13671535153600586No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6840.12144584474107532No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6730.11949276829056096No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5980.1061763379461448No Hit
CGGCCACTGACCCAGCTGCTGCTGCTGCGGACGCTGGAAAGAGC5670.10067221340378614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)