FastQCFastQC Report
Wed 31 May 2023
EGAF00007924750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563214
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21460.38102746025489426No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA12910.22922015432855006No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12820.22762218268722015No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12760.22655686825966684No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12070.214305752342804No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11440.20311995085349444No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10790.1915790445550004No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10040.17826261421058426No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9720.17258093726363338No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9640.17116051802689564No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9540.16938499398097348No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8830.15677877325492617No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8500.15091954390338308No Hit
ATGAGCCACCAGAGCCTGGACGATGACGCTG7430.13192143661201605No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6670.11842745386300767No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6480.11505395817575556No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5880.10440081390022266No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5860.10404570909103822No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)