FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546640
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG12390.22665739792184983No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12360.22610859066295916No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11840.21659593150885412No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11520.21074198741402017No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11150.2039733645543685No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10450.19116786184691936No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9320.17049612176203716No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8500.15549539001902532No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8230.15055612468900922No Hit
CGGCACCTGCGGTTTGCGGGTACCGCTGAAGCGTGGGTGATGCT6850.12531099078003805No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6570.1201887896970584No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6300.11524952436704229No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6030.1103102590370262No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC5610.10262695741255672No Hit
CGGCCACTGACCCAGCTGCTGCTGCTGCGGACGCTGGAAAGAGC5570.10189521440070247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)