FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546640
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50810.9294965608078443No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21290.38947021805941756No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA12840.23488950680521No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12540.22940143421630324No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11530.21092492316698375No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11320.207083272354749No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG10890.19921703497731597No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9620.17598419435094395No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9380.17159373627981853No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9120.166837406702766No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9090.1662885994438753No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8720.15951997658422362No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8300.15183667495975414No Hit
ATGAGCCACCAGAGCCTGGACGATGACGCTG6600.12073759695594907No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6380.11671301039075077No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6350.1161642031318601No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5860.1072003512366457No Hit
ATCGTTCTGCAGGAACAGCAGCACGGCCAAG5570.10189521440070247No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5560.10171227864773892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)