FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533618
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC50800.9519918743370727No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48000.8995198812633757No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG38350.7186789051343845No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA31300.5865619225738262No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT26190.49080053521432937No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23390.43832854214063244No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG21190.3971005475827277No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG19380.36318115206008794No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC19270.3611197523321927No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG19200.35980795250535025No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17220.322702757403236No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG14070.263671765195327No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC13130.24605616752058587No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC12470.23368776915321446No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT12250.229564969697424No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12000.22487997031584392No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11520.21588477150321014No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG9070.16997177756372536No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8940.1675355778853037No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8910.1669733779595141No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC8570.1606017788005652No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC8270.1549797795426691No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8120.15216877991372105No Hit
CTGCGTTACGACTGGGGTAAATTCTATGCAA8070.15123178003740503No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT7800.14617198070529855No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7460.13980038154634963No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC7210.13511538216476957No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7130.13361618236266393No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7080.1326791824863479No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6750.1264949833026622No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6660.12480838352529337No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6220.11656278461371243No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5950.11150298528160593No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5790.1085045856773947No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5600.10494398614739384No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG5420.10157078659265616No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5390.10100858666686656No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5380.10082118669160335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)