FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560016
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT40250.7187294648724322No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC39130.6987300362846777No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA32140.5739121739378875No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA25440.4542727350647124No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24250.4330233421902231No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT20660.3689180309134025No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19780.35320419416588095No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA19730.35231136253249906No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17940.3203479900574269No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT17170.3065983829033456No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT14600.2607068369475158No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT13180.23535041855946973No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG12860.22963629610582556No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12490.22302934201879945No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11620.20749407159795433No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA10150.18124482157652638No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA9720.17356646952944202No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9640.17213793891603096No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8900.1589240307419788No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA8480.1514242450215708No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7790.13910316848090054No Hit
CAGTTCAACAGTACGCGGGATGGACATCAGGCTAGCCCAGCCTT7560.1349961429673438No Hit
GTAGCCAGAACCATCGGAACCGGTAACCGGAGCTGCTTTGGAGC7550.1348175766406674No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7430.13267478072055083No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG7280.12999628582040512No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7160.12785348990028855No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC7140.1274963572469358No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT7010.12517499500014287No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6500.11606811233964745No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6220.11106825519270878No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT5960.10642553069912288No Hit
CTGACGGTTGATTTCATCTTTGGTGCGGACGTTGTCGGCGTGTG5940.10606839804577012No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG5800.10356846947230079No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5620.10035427559212595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)