FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924756

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924756
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560016
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC55380.9889003171337961No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG41690.744443015913831No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA34710.6198037198937173No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT28510.5090925973543613No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24730.44159452587068937No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG22810.40730979114882426No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC22290.3980243421616525No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG21750.388381760521128No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG21660.3867746635810405No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18770.3351689951715665No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG15690.2801705665552413No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC14370.25659981143395905No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC13700.24463586754664152No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT12600.22499357161223965No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12370.22088654609868288No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12140.21677952058512615No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10690.19088740321705094No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG10160.18142338790320275No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9670.1726736378960601No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9400.16785234707579783No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC9280.16570955115568126No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT9200.16428102054227023No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC8550.15267420930830547No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC8240.14713865318133768No Hit
CTGCGTTACGACTGGGGTAAATTCTATGCAA8100.14463872460786834No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8050.14374589297448645No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7680.13713893888746034No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7600.13571040827404932No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7540.13463901031399103No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7130.1273177909202594No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6800.12142510213993885No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6750.12053227050655695No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT6280.11213965315276705No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6080.10856832661923946No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6070.10838976029256307No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5970.10660409702579925No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5910.10553269906574098No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5880.10499700008571183No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5820.10392560212565355No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5670.10124710722550785No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5650.10088997457215508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)